Coronavirus COVID-19 (SARS-CoV-2)

Updated: July 7, 2021

YouTube video.

May 2021 Recorded Webinar (click to view):
Vaccines, Variants and Long-Term Effects
Presented by Paul Auwaerter, MD, MBA
Professor of Medicine at Johns Hopkins University School of Medicine. Details.

MICROBIOLOGY

  • Coronaviruses
    • Positive sense, single-strand enveloped RNA virus belonging to the family Coronaviridae.
    • Coronavirus name derived from the Latin corona, meaning crown. The viral envelope under electron microscopy appears crown-like due to small bulbar projections formed by the viral spike (S) peplomers. Neutralizing antibodies against the S-protein are believed to play an important role in protective immunity.
  • This topic covers the novel coronavirus 2019, SARS-CoV-2.
  • For discussion of other coronaviruses, see individual highlighted modules:
    • Coronavirus for common human respiratory coronavirus infections.
    • SARS for the SARS-CoV virus, not known to circulate since 2002–2003.
    • MERS for the MERS-CoV virus, causing sporadic infections, mostly in the Arabian peninsula since 2012.
    • Coronaviruses also commonly infect birds and mammals causing gastroenteritis and respiratory infections.
  • SARS-CoV-2 appears to be a zoonotic infection that has adapted to humans.
    • Origin is uncertain although bats implicated as this virus most closely related by genetic analysis to bat SARS-like coronavirus (genus Betacoronavirus, subgenus Sarbecovirus). An intermediary, the scaled mammal pangolin, has also been invoked as a potential bridge for the jump to humans.

CLINICAL

  • COVID-19 (novel COronaVIirus Disease-2019) is the disease, SARS-CoV-2 is the virus.

Epidemiology

  • COVID-19 cases
    • Remains a pandemic by the WHO. It is unlikely this virus will disappear and may become part of the repertoire of respiratory viruses that infect humans regularly.
    • Real-time global reports available through Coronavirus COVID-19 Global Cases Dashboard by Johns Hopkins CSSE.
      • Despite mitigation strategies, including facial masks and social distancing, upswings in cases attributed to lack of cohesive public health recommendations, super-spreader events, return to work and school activities, lack of social distancing/wearing face masks (especially younger adults), increased transmissibility of viral variants.
        • Most infections acquired in homes and congregate living.
      • Rates of infection remain considerable in many countries, with the U.S. accounting for the highest number of both cases and deaths worldwide.
      • The emergence of viral variants such as B.1.1.7 (alpha), first described in the UK in fall 2020, and B.1.357, identified first in S. Africa and P.1 (Brazil), appear to have higher rates of transmission and may be more virulent.
        • In the U.S., some viral variants make up substantial proportions of cases, for example, B.1.1.7 by late March 2021 >44% of variants circulating in the U.S.
          • Other "homegrown variants" that are prominent include, Southern California (B.1.427, B.1.429) and New York (B.1.526). Whether these variants are more transmissible or more virulent is unclear.
          • B.1.617.2 (delta), first noted in India, appears to be more transmissible and possibly more virulent. Now accounting for an increasing percentage of infections in the UK, ~6% in the U.S. (June 2021)
  • Risk groups
    • Older age, especially > 65 yrs, and people with comorbidities appear more likely to develop an infection with severe symptoms and be at risk for death.
      • Age gradient, with > 85 years highest; 80% of U.S. deaths are age > 65 years.
      • CDC reports 94% of COVID-19-related deaths to have at least one comorbidity present.
    • Comorbidity risks (per CDC): as determined by types of studies
      • High levels of evidence (meta-analysis, systemic reviews): cancer, cerebrovascular disease, chronic kidney disease, COPD, diabetes (types 1 and 2), cardiovascular disease (CHF, CAD, cardiomyopathies), smoking (current or former), obesity/BMI > 30, pregnancy,
      • Cohort or case-control studies: children with certain health problems, Down syndrome, HIV, neurologic conditions, overweight (BMI 25-30), pulmonary disease, solid organ or blood stem cell transplantation, substance use disorders, use of corticosteroids or immunosuppression.
      • Case series or small sample size: cystic fibrosis, thalassemia
      • Mixed evidence: asthma, hypertension, liver disease, immunodeficiencies
      • In the U.S.:
        • Obesity appears to be emerging as a risk factor, BMI ≥ 30, in nearly half of hospitalized patients.
      • Blacks, Native Americans and Latinx are hospitalized at rates greater than expected on a population basis, as well as higher mortality rates.
    • Younger adults are also being hospitalized in the U.S., reflecting increasing percentages in many states, and these cases in the later phases of the pandemic account for an increasing percentage of cases.
    • Children appear less symptomatic with infection and less prone to severe illness.
      • Children < 1 yr at high risk for severe illness
      • Children 1–10 yrs: low risk of disease and transmission
      • Children 10–18 yrs: higher risk of disease compared to 1–10 yr group; however, a higher risk of transmission in some studies than adults.

Transmission

  • By respiratory droplets predominantly, but aerosolization possible from speaking or singing (especially indoors/prolonged exposure) > fomite. Virus found in respiratory secretions and saliva.
    • Spread from a fomite, risk considered very low.
  • Viral shedding by asymptomatic people may represent 40–50% of total infections, though some uncertainty remains regarding how much they contribute to totals.
    • Viral shedding may antedate symptoms by up to 3+ days.
    • Viral titers are highest in the earliest phases of infection, 1-2 days before the onset of symptoms, and then in the first 4-6 days of illness in patients without immunosuppression.
  • Why widespread and rapid transmission occurs is not completely understood.
    • Asymptomatically infected people who shed and spread is a likely explanation.
      • People who are not ill will not as carefully take measures to avoid spread.
        • Some are super-spreaders, which may be due to inherent characteristics (e.g., their speech generates aerosol, loud speaking, etc).
      • Mass gatherings especially indoors in smaller spaces or with poor ventilation appear to enhance transmission.
      • This is in large part the rationale behind universal mask use.
    • Aerosol spread appears possible in some settings.
      • The amount of airborne transmission frequency is debated, evidence of viral RNA beyond expected droplet range especially indoors if poor ventilation exists.
        • 6-ft distancing remains a routine social distancing recommendation; however, uncovered face/sneezes may generate partial aerosolization with some activities for greater distances.
      • To date, there has not been a well-documented outbreak traced to aerosol transmission at a distance (e.g., through HVAC ventilatory systems or airplane ventilation).
    • Whether droplet or aerosol, concern for spreading by those ill or not ill but infected is the rationale for the universal wearing of masks while in public or if one cannot maintain social distancing, at least six feet.
    • Stool shedding also described later in the disease, but uncertain what role, if any, that plays. Some researchers using as a tool to predict community outbreaks.

Incubation period and viral shedding, isolation, quarantine or airborne isolation

  1. Mean incubation 4–5 days, range 2–14
  2. Quarantine and Isolation: some local health departments may have some variation from CDC guidance below.
    1. For COVID-19 illness, the correct term is isolation.
      1. 10d have passed since symptom AND
        1. At least 24 hours with no fever without fever-reducing medication and
        2. Other symptoms of COVID-19 are improving, e.g., loss of taste and smell may persist for weeks or months after recovery and need not delay the end of isolation​.
      2. A limited number of persons with severe illness or immunosuppression may produce replication-competent virus beyond 10 days that may warrant extending the duration of isolation and precautions for up to 20 days after symptom onset; consider a consultation with infection control experts.
    2. For close contacts with a person with COVID-19, the correct term is quarantine [CDC defined as at least 15 minutes cumulative over 24h, < 6 ft starting two days before illness onset or positive test result if asymptomatic].
      1. 14d observation remains CDC recommended to exclude infection.
      2. Options to decrease to 10d to enhance compliance or 7d if SARS-CoV-2 testing is negative 5-7 after close exposure.
  3. Viral shedding as infectious risk
    • Occurs following recovery but does not appear to play a role in transmission in relatively healthy people >10d following the onset of infection (though some variants may be infectious longer, viral RNA may be detected long after for many weeks; hence, why repeated routine testing for negative SARS-CoV-2 RT-PCR not recommended).
    • In ill hospitalized patients or those with health problems, it may not be so short, but 20-28d is a conservative stance used by some hospitals to remove airborne precautions rather than the two negative nucleic acid amplification tests (NAAT) rule.
      • Rare reports of cultivatable virus > 60 days especially in severely immunocompromised patients.:
        • Low cycle threshold (CT), e.g., < 30 and certainly < 20 may indicate an infectious virus is present.
  4. Some accumulating data suggest that high viral inoculum may lead to increased risk for disease severity.

Symptoms

  • May occur 2–14 d after exposure (most data are taken from hospitalized patients or presenting for emergency care, less clear about presenting symptoms for the less ill)
  • Fever and chills (44%–98%)
    • Range may be lower at initial hospital presentation or in the outpatient setting.
  • Cough (46–82%, usually dry)
  • Shortness of breath at onset (31%)
  • Myalgia or fatigue (11–44%)
  • Loss of taste or smell
    • Sign of early infection that many experience; however, not unique to COVID-19 as may be seen uncommonly with other viral infection
  • Headache
  • Sore throat
  • Sinus congestion, rhinorrhea
  • Nausea, vomiting or diarrhea

Less common symptoms:

  • Chest pressure or pain
  • Confusion
  • Cyanosis
  • Skin changes (chilblains or COVID toes)

Disease spectrum

  • Although severe COVID-19 illness is mostly a lower respiratory tract infection, early and mild cases may have features of upper respiratory tract viral infection.
  • ~80% of infections are not severe, and patients recuperate without special treatment.
    • Especially true for children and younger adults.
  • ~20% develop significant infection (higher risk if elderly or comorbidities).
    • ~15% require hospitalization
    • ~5% require ICU care
    • Lower percentages for those < 50 yrs even with comorbidities.
  • Overall mortality risk: 0.5–1.0% (influenza 0.1%), but higher with risk factors and age gradient (highest if > 85 yrs, e.g., 10–27%).
    • Hospitalized patient mortality in NYC hospitals fell from 25-28% in the early pandemic to 7-8% by summer.
  • For hospitalized patients with pneumonia, limited studies suggest the disease course, true especially of older patients, those with comorbidities:
    • ~50% develop hypoxemia by day 8
      • Severe illness and cytokine release syndrome appear to develop mostly within 5–10d after symptom onset in susceptible patients.
      • Markers of a severe infection include regular high fevers (>39°C), RR > 30, worsening oxygen requirements (4–6L nasal cannula), also elevated IL-6 levels (> 40–100), CRP, ferritin, d-dimer.
      • ARDS develops in 17–29% +/- multiorgan system failure.
    • Patients in the ICU often require mechanical ventilation with prone positions recommended if poor lung compliance; ECMO used in some centers.

Laboratory and imaging findings

  • In COVID-19 pneumonia
    • Leukopenia in ~70% of hospitalized patients.
    • LDH may be modestly elevated.
    • LFTs elevated more commonly than in typical community-acquired pneumonia cases
    • Note: the detection of other respiratory viruses in COVID-19 may be as high as 20% (e.g., influenza in spring 2020; however, near-zero for the 2021-2022 respiratory season).
      • Lab detection of viruses such as RSV, influenza, etc. should not result in the conclusion that SARS-2-CoV is not present.
    • Chest CT may show ground-glass opacities that may evolve into consolidation or ARDS.
      • Findings appear to peak at 10d of illness, resolution begins after day 14, for those who are hospitalized.
      • CT may show lung findings (such as ground-glass opacities) before the development of symptoms.
    • Among hospitalized patients, about one-third need to be in the ICU/intubated with an ARDS picture.
      • Elevations in IL-6 (> 40–100), CRP (> 10x normal), ferritin (> 1000) suggested correlating with a cytokine release the syndrome-like picture and impending ARDS.

Differential diagnosis

  • COVID-19 cannot be easily distinguished from other causes of a viral respiratory infection such as influenza, RSV, other respiratory viruses or community-acquired pneumonia based only on clinical grounds.
    • Anosmia and dysgeusia occur at a much high frequency than with other respiratory viruses; studies have cited ranges from 15-48%.
    • Influenza may be more abrupt onset; COVID-19 often with more perturbations of taste and smell.
    • Increasingly, viral multiplex testing incorporating SARS-CoV-2 available; however, influenza and RSV rates very low in the 2020-2021 respiratory season.
  • Also, consider pulmonary embolus, acute myocardial infection, chest crisis (sickle cell disease), etc.
    • Thromboses complicate critical COVID-19 patients with significant frequency, in some series up to 40% especially in the critically ill.

COVID-19 testing

  • Testing capacities have improved but in some locations still result in delays in turnaround for molecular testing. Additional information through CDC.
    • Exact sensitivity not known; however, the general feeling is that they may miss 10–20% depending on technique and timing of illness, so repeat swab needed if high suspicion. Lower respiratory tract samples are noted to have higher yields.
    • Detection of viral RNA ≠ infectious virus, necessarily but is true for the first 10d of symptoms in patients who are not severely ill or immunosuppressed.
      • Cycle threshold values are not standardized and vary among platforms, and are not reported as clinical data. However, if values available, if in the upper 30s, the low likelihood that the viral shedding correlates with active, replicating virus.
  • MOLECULAR
    • Nasopharyngeal (NP) swab specimen is the norm, other samples used include nasal, oropharyngeal, saliva, lower respiratory samples.
    • CDC recommends approved assays that detect SARS-CoV-2 nucleic acid or antigen from respiratory tract samples. CDC has further guidance on details for specimen collection, handling and other aspects.
    • Some assays are point-of-care, others may take 1–2 or more days depending on how they are sent and processed.
    • Lower tract specimens may have a higher yield than the upper tract (nasal, oropharyngeal or nasopharyngeal). The false-negative rate is not well known, but even for molecular assays may range as high as 10-30% and depends on when in the course of the disease the testing is done, with later testing having lower rates of detection. The specificity of molecular RNA assays is excellent.
  • ANTIGEN
    • Tests detect viral proteins, e.g., SARS-CoV-2 spike protein.
    • Sensitivity is lower than molecular tests; however, the advantage is a quick turnaround time, usually < 15 minutes.
      • Detects high viral loads, typically occurring with the onset of symptoms until day 7.
    • FDA-EUA approval is only for symptomatic early illness of < 1 week as high viral load needed to generate a positive assay.
      • Role is best for quick assessment in situations of congregate living, need for fast identification of an outbreak.
        • Repeated testing will increase the risk of false positives but generally can trust a positive to indicate infection.
      • Symptomatic people who test negative by antigen still require follow-up molecular testing.
    • Use for the screening of asymptomatic people is increasing but data are limited. CDC has issued an algorithm with interim recommendations.
      • If high pre-test probability, need to confirm antigen negatives with molecular testing.
      • If low pre-test probability, need to confirm antigen positives with molecular testing.
  • SEROLOGIC
    • Antibody-based tests for COVID-19 may have high rates of false-positive testing if used in low-positive-predicative value scenarios (e.g., screening as in "Have I had COVID-19?"), especially if using anti-nucleoprotein (N) SARS-CoV-2 antibody testing which may cross-react more commonly with common respiratory coronaviruses.
      • Tests have high analytic sensitivity and specificity; however, these are on known or spiked samples. Real-world testing, especially if the low probability of infection, makes these tests much less accurate, prone to false positives.
      • Clinicians should understand if the antibody assessed is against N or S proteins. Many commercial labs use assays against the N protein; these tests will not detect responses to SARS-CoV-2 vaccines (which employ spike protein).
    • Not recommended as the sole basis for diagnosis. Therefore currently available assays do not equate with an "immunity passport" if positive, unclear at what level they may equate with protective immunity.
      • The test may be used to support a clinical diagnosis if a patient has a high likelihood of infection but negative viral RNA testing, e.g., patient with fever, cough, ground-glass infiltrates but negative SARS-CoV-2 NAT testing.
      • FDA has warned not to use these tests yet to implicate authentic infection, protective immunity, or to rule out infection.
        • Cannot rule out infection except with molecular respiratory tests
        • Positive results may be due to past or present infection with non-SARS-CoV-2 coronavirus strains, such as coronavirus HKU1, NL63, OC43, or 229E.
      • In the future, more evaluation against validated banks of sera (positive and negative controls) or multiple antibody-based tests for SARS-CoV-2 may be shown to have higher specificity.
      • Many commercial antibody assays assess for antibodies against the N-protein, so they are not useful for assessing response to COVID-19 immunization, which provokes antibodies against the S-protein.
      • Most helpful for epidemiology.
      • Occasionally helpful to investigate recent illness consistent with COVID-19 but without confirmatory molecular determination.
    • Serologic response to SARS-CoV-2
      • One study found the serologic response to a recombinant SARS-CoV-2 nucleocapsid: IgM 85.4%, IgA 92.7% (median 5d after the onset of symptoms), and IgG 77.9% (14d after onset).[20]
      • Another study from China using IgM and IgG SARS-CoV-2-specific antibodies found < 40% seropositive if illness less than 7d, rising to ~100% 15d or more after onset.
      • Asymptomatically infected individuals produce antibodies to lesser levels and may fall below levels of detection within 2–3 months.[21]
  • VIRAL CULTURE
    • Not recommended, except for research purposes (requires BSL-3 lab)

SITES OF INFECTION

  • Like many severe viral infections, a growing list of potential associations and complications.
  • Progressive illness including the hyperinflammatory phase may cause multi-organ system failure.
  • Pulmonary
    • Pneumonia with characteristic ground-glass infiltrates, later with evolution to ARDS.
    • Co-infection with other viruses described as well as superinfection with bacteria and molds (especially Aspergillus).
  • GI
    • Some patients have nausea, vomiting, or diarrhea at the onset.
      • May herald more serious disease
    • The virus has been recovered from stool, but the significance is uncertain.
    • Liver: increased LFTs common
  • CNS: encephalopathy not uncommon but true encephalitis (abnormal CSF and detection of the virus) appears rare.

TREATMENT

General

  • Location of care
    • Depending on the capabilities of local health systems, public health officials recommend those with minor symptoms to stay home and not seek care in health clinics or hospitals and monitor symptoms.
    • Medical care focused on those who are short of breath, have severe symptoms, or require oxygen and supportive care that is only available in a hospital.
  • In-hospital supportive care
    • Oxygen, mechanical ventilation if needed
    • Prone positioning appears helpful if hypoxemia worsens despite intubation and ventilation.
    • ICU patients have high rates of clots (DVT, PE and thrombotic events (CVA, MI).
      • Anticoagulation prophylaxis should be pursued in most patients.
  • Secondary infections, especially in severe/critically ill patients:
    • ICU patients: 13–44%
      • Evaluate and treat bacterial or fungal superinfection (especially Aspergillus)
        • Sputum culture, beta-D-glucan and serum or BAL galactomannan are helpful to incorporate into decision-making.
        • Often “nosocomial” pathogens (ESBL, P. aeruginosa, A. baumannii, Aspergillus spp. )
        • Median time from onset of symptoms: 10–17d
        • The median time to death: 19d, terminal events?
    • Factors to consider (mostly China, NY hospital reports)
      • Frequent antibacterial use received in 80–100%
      • Antifungals in 7.5–15

Drug Treatment

  • Caution is advised as to whether proposed drugs that are not sufficiently tested are effective or safe for COVID-19.
    • If a clinical trial available, consider enrolling patients rather than prescribing off-label drug use to assist in understanding whether intervention is efficacious for COVID-19.
  • If considering off-label use of available medication, consider data known, risks of drug therapy. Many limit considerations only to patients at high risk for serious COVID-19 disease.
  • Johns Hopkins Hospital Therapeutic Guidance(PDF document) (updated 7/7/2021) is available with frequent updates for a more complete discussion of the risks/benefits of FDA-approved, investigational and off-label medications for COVID-19.

Antivirals

  • Remdesivir (RDV)
    • Based on the Adaptive Covid-19 Treatment Trial (ACTT-1[10]), RDV appears most beneficial if given for severe COVID-19 before mechanical ventilation, which reduces the length of hospital stay (from median 15d to 10d). Many institutions limit initiation to those who require oxygen but not ICU care.
    • FDA approved (Oct 2020) for COVID-19 hospitalized patients, ages ≥ 12 yrs or 40 kg.
      • EUA now issued for use in children < 12 yrs, wt 3.5 – 40 kg.
      • Assess sCr, LFTs and PT INR prior to use.
    • Dose: 200 mg IV load on day 1, then 100 mg IV q 24 days 2-5
      • Infuse over 30-120 min.
      • May extend for an additional 5d if no clinical improvement.
      • Carrier may accumulate in renal insufficiency, but not judged to be clinically significant.
    • Warnings:
      • Don’t use if hypersensitivity reactions ensue.
      • Consider d/c if LFTs 10x ULN.
    • Results of an NIH-sponsored clinical trial (ACTT-1) for COVID-19 patients with evidence of lung involvement:
      • The median time to recovery was reduced by 31% (10d v 15d).
        • Median days onset of symptoms (9d) prior to enrollment.
      • The mortality trend suggested (8% v 11.6%) but not statistically significant.
      • The benefit appears derived in this trial in patients started on RDV prior to mechanical ventilation.
        • NIH COVID-19 Guideline states BIIa recommendation for severe COVD-19 requiring oxygen but not mechanical ventilation.
      • Investigators concluded that benefit was accrued to patients prior to the need for mechanical ventilation, highly suggestive that this antiviral yields greater benefit the earlier it is initiated.
    • Another RCT, from China, did not show a benefit but did note a mortality trend toward benefit.[11]
    • The Solidarity trial (WHO trial, interim results) had RDV as one of four arms but did not find benefit regarding mortality, LOS or decreasing need for mechanical ventilation.
      • Though large trial, as a pragmatic trial there was no placebo comparator. Also, there were problems with selection and assignment bias, missing data.
    • Most in the U.S. continue to use RDV.

Other candidate antiviral therapies: only widely discussed drugs listed below

  • Fluvoxamine
    • Phase 2 data suggested benefit, unclear mechanism. Awaiting a larger, well-designed trial to evaluate. Insufficient data to recommend for or against.
  • Ivermectin
    • Double-blind, RCT of mild COVID-19 treatment x 5d, without efficacy. Not recommended.
  • Lopinavir/ritonavir (LPV/RTV)
    • COVID-19 RCT in hospitalized patients (RECOVERY) who also received other medications yielded no benefit but was given relatively late in the disease course,
  • Chloroquine (CQ) or hydroxychloroquine (HCQ)
    • Based on the arm of the RECOVERY trial showing no clinical benefit, and other clinical data with cardiotoxicity concerns
  • Among other investigational agents in trials of note: molnupiravir (formerly EIDD-2801) oral antiviral with preliminary evidence of reduced viral shedding, AT-527 (oral).

Immunomodulators

  • Many agents under consideration in clinical trials or proposed roles
  • Most initial interest regards anti-IL6 agents, to interrupt hyperinflammatory responses that resemble cytokine-release syndromes and cause lung injury.
  • RCTs are in progress to examine the impact on both the early and late use of such drugs.
  • Dexamethasone
    • Results from the RECOVERY trial showed dexamethasone 6 mg PO or IV daily for up to 10 days reduced 28-day mortality in certain groups of hospitalized COVID-19 patients: recommended for patients with severe COVID-19 (requiring oxygen) including those on mechanical ventilation by the NIH[2] and IDSA[3].
Effect of Dexamethasone on 28−day Mortality by Level of Respiratory Support[23]

Respiratory Support at Randomization

Dexamethasone

Usual Care

*Statistically significant

No oxygen received

17.0%

13.2%

Oxygen only*

21.5%

25.0%

Invasive mechanical ventilation*

29.0%

40.7%

Other corticosteroids shown to also be potentially beneficial in other trials and meta-analyses had a summary OR 0.66 on 28d all-cause mortality[9].

  • Two studies suggest preliminary potential benefits with inhaled budesonide:
    • STOIC: Phase 2 trial found a reduced need for medical care and improved time to recovery.
    • PRINCIPLE (preprint): Early interim analysis suggested shorter illness duration by 3d.
  • Baricitinib: an oral JAK1/JAK2 inhibitor that is FDA approved for the treatment of rheumatoid arthritis.
    • FDA EUA approved for ages ≥ 2 yrs COVID-19 in hospitalized adults and pediatric patients requiring supplemental oxygen, invasive mechanical ventilation, or ECMO.
    • ACTT-2 trial compared RDV + baricitinib vs. RDV + placebo
      • The primary endpoint was median time to recovery (defined as discharged from hospital or hospitalized but not requiring supplemental oxygen or ongoing medical care)
        • 7 days for baricitinib + remdesivir compared to 8 days for placebo + remdesivir
          [hazard ratio: 1.15 (95% CI 1.00, 1.31); p=0.047].
      • Most benefit in patients on high-flow oxygen not requiring mechanical ventilation.
    • COV-BARRIER (preprint): RCT with baricitinib vs standard of care (19% received RDV, 79.3% on corticosteroids which differs from ACTT-2 trial)
      • The composite primary endpoint (death, progression to high flow O2, NIMV, MV or ECMO) not significant.
      • Secondary endpoint 28d all-cause mortality 8.1% v 13.1%, a 38% reduction (HR 0.57 [95% CI 0.41-0.78] was not otherwise explained by the findings specifically, i.e, since primary endpoint not reached, no difference in groups regarding clots, MIs, CVA, etc.).
    • Dosing:
      • Adults and pediatric patients 9 years of age and older: 4 mg PO once daily
      • Pediatric patients 2 years to less than 9 years of age: 2 mg PO once daily
    • Duration: 14 days or until hospital discharge.
  • Interferon 1b
    • RCT from Hong Kong found when used with lopinavir/ritonavir and ribavirin (triple therapy) versus LPV/RTV alone, the triple therapy yielded quicker clinical improvement and reduced viral shedding.
    • Suspect most of the benefits derived from interferon; however, many hesitant to use since it tends to make people feel terrible
    • Phase II inhaled formulation trial yielded favorable results.
  • Tocilizumab
    • An FDA-approved anti-IL6R agent for CAR-T cell cytokine release syndrome and rheumatoid arthritis.
      • RCTs performed early in the pandemic as monotherapy have not had positive results.
      • More recent studies with high percentages of patients also on dexamethasone have shown benefit.
        • EMPACTA found less progression to ventilation or death if used prior to mechanical ventilation.
        • REMAP-CAP found that patients on high flow oxygen or within the first 24 hours of ICU care contributed most significantly more days of organ-free survival (10d compared to placebo) and decreased mortality.
        • RECOVERY found patients who were on oxygen with evidence of systemic inflammation (e.g., CRP > 7.5), had improved survival, and more likely to be discharged by day 28.
      • IDSA and NIH Guidelines not yet recommended use except in a clinical trial.
    • Dosing typically 8 mg/kg x single dose
  • Lenzilumab (anti-GM-CSF): LIVE-AIR study (preprint), n = 520, severe COVID-19, (69% on RDV, 94% on corticosteroids)
    • Primary endpoint (survival w/o mechnical ventilation): mITT, 16% v. 22%, 54% decrease (HR 1.54, 95% CI, 1.02-2.31)
    • Subgroup < 85 yrs and CRP < 150, 9% vs. 21%, 92% reduction, HR 1.92 (95% CI, 1.20-3.07)
    • Dosed as 600 mg IV q 8h x 3 doses
  • Anakinra (anti-IL1): SAVE-MORE RCT (preprint), 100 mg SQ daily x 10 vs standard of care, hospital stay was shorter and 28-day mortality decreased (hazard ratio: 0.45; P: 0.045).

Antibody-based therapies

Convalescent plasma (CP) or serum-containing neutralizing antibodies against SARS-CoV-2

  • Proposed as a useful treatment, no large RCT yet to show benefit.
    • NIH Guidelines say there is neither strong data for or against its use.
    • FDA EUA (revised 2/4/21) now approves the use of only high-titer convalescent plasma.
      • See the FDA fact sheet for healthcare providers for detailed information.
      • Many RCTs remain in progress, but no large trials have yet confirmed benefit although substantial observational data points to subsets of COVID-19 patients who may benefit
        • The subset derived from the expanded access use earlier in 2020 found that the use of high-titer plasma within three days of hospitalization conferred a mortality benefit if received before intubation[4].
        • A small RCT in patients older than 65 years with mild to moderate COVID-19 reduced progression to severe COVID-19 if received within 3 days of onset of illness[5].
        • Retrospective matched cohort study (preprint): CP within 3 days after admission, but not 4-7 days, was associated with a significant reduction in mortality risk (aHR = 0.53, 95% CI 0.47-0.60, p< 0.001).
        • Many RCTs published in 20202 were mostly small, underpowered) have not shown mortality benefit to date, although a meta-analysis of observational studies suggests early use does have an impact.
        • RECOVERY trial yielded no 28d mortality benefit; NIH and IDSA Guidance no longer recommends for hospitalized patients.
          • However, positive data suggest early use (< 3d of symptoms or hospitalization), as well as case reports in immunosuppressed illness suggest there remains a role.
      • Single-patient eIND (updated 11/16/20) also remains available.
      • This author favors use in patients with risk factors for severe COVID-19 if early in illness course or if patients are immunosuppressed (especially with impaired B-cell responses).
  • RCTs for prophylaxis, early and late COVID-19 treatment are in progress.
  • Prior treatment studies
  • Risks
    • Pathogen transmission (~1 per 2 million transfusions for HIV/HBV/HCV)
    • Allergic transfusion reactions
    • Transfusion-associated circulatory overload (TACO)
    • Transfusion-related acute lung injury (TRALI)
      • Risk < 1 per 5000, potentially higher in COVID-19 due to pulmonary epithelial injury
      • Risk lower if routine donor screening includes HLA antibody screening of female donors with a history of pregnancy

Monoclonal antibodies specific to SARS-CoV-2, in the U.S. only offered to outpatients with mild-moderate COVID-19. Trials in hospitalized patients have not yielded benefits to date.

  • EUAs issued by the FDA for outpatient therapy of COVID-19.
    • Bamlanivimab and bamlanivimab/etesevimab: single or two neutralizing mAbs against the surface spike protein of SARS-CoV-2.
      • Paused distribution until further notice of BAM/ETE by HHS as of 6/25/21, due to less effectiveness against variants of concern (P.1, B.1.356).
    • Casirivimab and imdevimab: two neutralizing mAb against the surface spike protein of SARS-CoV-2. Appears to maintain activity against variants of concern (VOC).
      • Only offered to patients ≥ 12 yrs at high risk for COVID-19 hospitalization or complications.
      • Dose:600 mg of casirivimab and 600 mg of imdevimab administered together (EUA dose change 6/2/21 from 1200/1200).
        • Dosing for treatment may be given either IV or SC.
      • Benefits cited are decreased need for hospitalization or ED visits (6% placebo, 3% in mAb arm)[29].
      • RECOVERY trial (preprint) in hospitalized patients using 4g/4g dose found mortality benefit in patients who were seronegative at the time of administration.
        • As of June 30, 2020, FDA EUA only authorizes treatment for mild-moderate COVID-19 in outpatients, not hospitalized patients.
    • Sotrovimab: single mab that has activity against VOCs. EUA granted 5/21/21 for outpatients with risk factors based on 1% vs 7 % placebo hospitalization or death (85% reduction).

Prevention

  • As a newly described virus, much remains to be learned.
    • Travel restrictions, quarantines, school/work closings, social distancing are helpful to lower Ro (contagiousness of infection), but the degree of mitigation remains a source of considerable debate among public health officials and politicians.[12]
    • Difficulty sorting other causes of respiratory illness from the novel coronavirus, especially during influenza season. Co-infections are possible (viral, bacterial, fungal).
  • Healthcare workers and health systems in the U.S.
    • Recommend following CDC Guidance for Risk Assessment and Public Health Management of SARS-CoV-2[40]
    • Debate exists whether standard contact and respiratory droplet precautions are sufficient (as with SARS, MERS) versus aerosol/airborne precautions.
      • Current CDC recommendations are for aerosol (e.g., use of negative pressure isolation) airborne precautions in healthcare settings.
  • General measures recommended:
    • Avoid sick individuals.
    • Wash hands with soap and water x 20 seconds before eating, after cough/sneezing or bathroom visits.
    • Social distancing maneuvers include keeping spacing >6 feet from other people.
    • Masks now universally recommended when in public.
    • Don’t touch the face, eyes, etc.
    • Stay home if ill.
    • Cover your sneeze.
    • Disinfect frequently touched household objects.

Vaccines

  • [Recorded Webinar]COVID-19 Update with Dr. Auwaerter of Johns Hopkins: Vaccines and Variants (May 2021)
  • Multiple candidate vaccines are in development.
    • Preliminary data from mRNA vaccines are highly promising (94-95% efficacy including avoiding severe COVID-19) and have led to the FDA EUAs for two vaccines: Pfizer/BioNTech and Moderna COVID-19 vaccines.
      • Both appear to retain excellent protection against variants of concern including P.1, B.1.357, B.1.617.2 (delta).
    • mRNA vaccines in the U.S. with Emergency Use Authorizations (see individual modules for details):
  • Select other vaccines in use in other countries or under consideration by the FDA
    • AstraZeneca/Oxford ChAD vaccine with inadvertent lower half-dose as dose #1 followed by full dose = 90% efficacy, whereas designed dosing yielded 62% percent efficacy, though recent 1 dose efficacy x 3 months is cited as 76% effective.
      • Appears to not work well against the viral variant identified in S. Africa (B.1.357).
    • JNJ/Janssen adenovirus vaccine with FDA EUA also appears protective against severe COVID-19.
      • One-dose vaccine
      • Cited as 66% overall effective
        • 72% in the U.S., 66% in Latin America, 57% in S. Africa.
        • 85% effective at preventing severe COVID-19.
      • Rare clots described, with pause suggested by FDA/CDC (4/12/21, subsequent resumption)
    • Other vaccines have been employed in countries such as China, UAE, Brazil.
      • Multiple sources for updates include WHO and ACIP.

Complications

  • Thrombosis: increasing reports of substantial rates of DVT and PE in critically ill patients. Some centers using low-molecular-weight heparin for prevention; others calling against it, citing paradoxical clotting.
    • MI, CVA also appear with unusual frequency.
    • Unclear if COVID-19-associated incidence of venous thromboembolism higher than what is reported customarily in ICU populations despite prophylaxis (~8-9%) as only "high incidence" centers reporting.
  • HLH-like changes described in a subset of patients who died, autopsy findings.
  • CNS: Encephalitis (rare) or encephalopathy (uncommon, more in elderly)
  • Cardiac: myocarditis (transient and also more severe)
  • Secondary infection
    • Limited data on incidence because many COVID-19 patients are treated empirically with antibacterials for pneumonia.
    • Appears particularly in critically ill patients and those with prolonged hospitalizations.
    • Wuhan’s experience suggested a 10–20% incidence of bacterial and fungal infections, with a higher percentage in patients who died.
    • Anecdotal experiences growing regarding concern for the development of pulmonary aspergillosis.

Selected Drug Comments

Drug

Recommendation

Bamlanivimab/etesevimab

Due to insufficient in vitro activity (by pseudoneutralization assay), the distribution of this combination by HHS has been halted as of 6/25/21.

Baricitinib

A selective inhibitor of Janus kinase (JAK) 1 and 2, FDA approved for rheumatoid arthritis, studied for COVID-19 in ACTT-2 studying RDV v. RDV + baricitinib. The drug offered a one-day improvement in symptom resolution which has led to FDA EUA. Upon subgroup analysis, the drug worked based on the ordinal 6 group (high flow oxygen or non-invasive ventilation). These patients had a time to recovery of 10 days with combination treatment and 18 days with control (rate ratio for recovery, 1.51; 95% CI, 1.10 to 2.08). However, place in treatment uncertain and is the focus of the ACTT-4 trial starting in Jan 2021, RDV + barcitinib vs. RDV + dexamethasone. The drug might be considered for use in patients who cannot receive dexamethasone but who require high-flow oxygen or non-invasive ventilation. Recent COV-BARRIER (preprint) RCT with baricitinib vs standard of care (19% received RDV, 79.3% on corticosteroids which differs from ACTT-2 trial). The composite primary endpoint (death, progression to high flow O2, NIMV, MV or ECMO) was not significant. the secondary endpoint 28d all-cause mortality 8.1% v 13.1%, a 38% reduction (HR 0.57 (95% CI 0.41-0.78) was not otherwise explained by the findings specifically, i.e, since primary endpoint not reached, no difference in groups regarding clots, MIs, CVA, etc.). Impressive mortality reduction; however, the study was more international than in the US and only a minority received RDV.

Casirivimab imdevimab

Two monoclonal antibodies have a similar FDA EUA indication for mild-moderate outpatient COVID-19. The published trial suggested a decrease in medical visits with use, which was the basis for emergency approval. In the overall trial population of 275 patients, 6% of the patients in the placebo group and 3% of the patients in the combined REGN-COV2 dose groups reported at least one medically attended visit; among patients who were serum antibody–negative at baseline, the corresponding percentages were 15% and 6% (difference, −9 percentage points; 95% CI, −29 to 11). Adverse reactions were not notably different in the arms. This combination cocktail appears to retain activity against all VOCs. Recent RECOVERY trial (preprint) suggests mortality benefit in hospitalized patients who are seronegative at the time of administration.

COVID-19 Convalescent Plasma

Still waiting for large RCT to confirm use, however many trials used the agent late (e.g., RECOVERY, others). Convalescent plasma works best as an antiviral. Current FDA EUA for hospitalized patients now enforces the use of high-titer plasma. Best used if within 3 days of illness onset or first three days of hospitalization. May also have a role in immunosuppressed populations.

Dexamethasone

The RECOVERY trial provides the first evidence of therapy that provides a mortality benefit to those who are mechanically ventilated (or who require oxygen, severe COVID-19). In this trial, there was a trend toward increased mortality in those who do not require oxygen, so not recommended in this group usually with early infection. By the numbers, the rate ratio of mortality at 28d was 0.65 (p=0.0003) for those mechanically ventilated, 0.8 (p=0.0021) for severe COVID-19 patients who needed non-invasive supplemental oxygen, but 1.22 (p=0.14; so higher mortality trend) for patients who did not require supplemental oxygen. Some aspects of the RECOVERY trial deserve comment: the UK trial mortality was unusually high if the same benefit would be witnessed in North America is less clear. Also, patients with less than 7d of symptoms appeared to not benefit, suggesting that during the early phase of viral illness there is no impact or potential harm (similar to influenza) but the benefit is seen with the later hyperinflammatory phase. This trial was open-label, but the mortality endpoint would tend to discount bias to a substantial degree. Women appeared to benefit less from dexamethasone than men.

Hydroxychloroquine

The antimalarial and antiinflammatory has not been shown in large randomized trials to yield benefit in the treatment of COVID-19 in hospitalized patients (RECOVERY trial), and concerns raised about cardiotoxicities in critically ill patients. It also appears to not offer prevention after exposure.[22] The drug is not recommended by any mainstream experts or authorities.

Remdesivir

The ACTT1 results showed improved LOS by 4 days in patients receiving RDV. The average duration of symptoms prior to enrollment was 9d median with a wide range. The key observation from data is that benefit was derived in patients who were started prior to mechanical ventilation, suggesting that the use of the drug earlier in the disease course has efficacy--consistent with its mechanism of action as an antiviral. Although August FDA EUA expanded use to all hospitalized patients, there is no compelling data to use it in patients without oxygen needs are who are critically ill at the start of therapy.

Sotrovimab

Single mAb that preliminary data showing 85% reduction in death or hospitalization for patients receiving it for mild-moderate COVID-19 as outpatients prompted the FDA to issue EUA (5/24/21).

Tocilizumab

This anti-IL6R mAb has had an up and down and now up history for COVID-19. The drug appears to not work as monotherapy; however, when combined with dexamethasone appears to have an impact on reducing severity and duration of illness as well as reduced mortality in three studies: EMPACTA, REMAP-CAP, and RECOVERY. Endorsed for use by NIH and IDSA for patients on high-flow 02, or first 24h of ICU care--baricitinib is an alternative. Either should be combined with dexamethasone or another corticosteroid.

FOLLOW UP

  • Case fatality rates highly variable in regions, different countries. Unclear why and may be multifactorial.
  • Preliminary evidence in humans and SARS-CoV-2-infected rhesus macaques suggest that reinfection does not occur.
  • Recovery from COVID-19 produces antibodies, but the response is heterogeneous, especially lower in asymptomatic infected patients, and measurable responses may diminish significantly in as little as 2–3 months. The protective immunity duration is unclear. T cell responses also likely important. Not yet clear what is required to prevent a second infection.
  • Advice for COVID-19 (+) patients and self-isolation/quarantine: further details, CDC.
    • Inpatients:
      • Healthcare settings: no longer a requirement for 2 sequential negative COVID-19 RT-PCR tests before airborne precautions can be lifted, as viral RNA has been detected (so-called re-positives), for up to 12 weeks or longer.
    • Outpatients:
      • CDC (July 2020), also time-based, no less than 10d after symptom onset.
        • Changed from “at least 72 hours” to “at least 24 hours” have passed since
          • The last fever without the use of fever-reducing medications.
          • Also changed from “improvement in respiratory symptoms” to “improvement in symptoms” to address the expanding list of symptoms associated with COVID-19.
        • Patients who have impaired ability to make antibodies (e.g., immunosuppressed patients) are likely to shed the virus longer, 20d recommended as a minimum including for those with severe COVID-19 or immunosuppression.

OTHER INFORMATION

  • Testing for viral RNA may include asymptomatic in addition to symptomatic patients; however, if not using molecular tests, see CDC algorithm for proper interpretation and follow-up testing (if needed) when using antigen-based tests.
  • Severe illness strikes much the same populations at high risk for complications of seasonal influenza (e.g., elderly, immunosuppressed, obesity and comorbidities).
  • The case fatality rate is probably higher than seasonal influenza (≤0.1%) but may be lower than initially reported (~ 2–4%), but careful epidemiology surveys in progress; it may be different in some countries as social distancing interventions and other factors differ.
    • Current estimates suggest COVID-19 is ~6–12x worse than seasonal influenza but has a steep age gradient.

See also

Basis for recommendation

  1. Hanson KE. Infectious Diseases Society of America Guidelines on the Diagnosis of COVID-19, last updated 5/27/21, [accessed 7/7/21]. [https://www.idsociety.org/practice-guideline/covid-19-guideline-diagnostic...]

    Comment: Helpful guidance including the suggestion that lower tract specimens (if performed with a validated assay) may be more sensitive than the traditional nasopharyngeal swab, though the evidence is limited. Rapid testing, including antigen and serology also addressed. Also, look at CDC for diagnostic guidance information.

  2. NIH COVID-19 Treatment Guidelines. https://www.covid19treatmentguidelines.nih.gov/ (accessed 7/7/21)

    Comment: Revised regularly with updates. The format now includes updated reference tables for some drugs. Informs much of the basis for RDV, dexamethasone, tocilizumab and baricitinib use discussed.

  3. Bhimraj A, et al. Infectious Diseases Society of America Guidelines on the Treatment and Management of Patients with COVID-19 [accessed 7/7/21]

    Comment: Regularly updated, and generally in concert with the NIH GL. One major area where our guide differs is in convalescent plasma use that we believe has a role for early illness in hospitalized patients (< 3d) or in some severely immunosuppressed patients who cannot generate meaningful antibody responses.

References

  1. Joyner MJ, Carter RE, Senefeld JW, et al. Convalescent Plasma Antibody Levels and the Risk of Death from Covid-19. N Engl J Med. 2021.  [PMID:33523609]

    Comment: A subset of patients in the expanded access use of COVID-19 convalescent plasma found that high titer recipients who received units before critical illness had a lower risk of death compared to patients who got low titer plasma.

  2. Libster R, Pérez Marc G, Wappner D, et al. Early High-Titer Plasma Therapy to Prevent Severe Covid-19 in Older Adults. N Engl J Med. 2021.  [PMID:33406353]

    Comment: Small but well done double-blind RCT of patients > 65 yrs with mild COVID-18 and less than three days of symptoms. A total of 160 patients found that severe respiratory disease developed in 13 of 80 patients (16%) who received convalescent plasma and 25 of 80 patients (31%) who received placebo (relative risk, 0.52; 95% confidence interval [CI], 0.29 to 0.94; P = 0.03), with a relative risk reduction of 48%. A modified intention-to-treat analysis that excluded 6 patients who had a primary end-point event before infusion of convalescent plasma or placebo showed a larger effect size (relative risk, 0.40; 95% CI, 0.20 to 0.81). No solicited adverse events were observed. The study is the best evidence that you need high titer units and early administration to have an effect.

  3. Gottlieb RL, Nirula A, Chen P, et al. Effect of Bamlanivimab as Monotherapy or in Combination With Etesevimab on Viral Load in Patients With Mild to Moderate COVID-19: A Randomized Clinical Trial. JAMA. 2021.  [PMID:33475701]

    Comment: Interim results from the ongoing BLAZE-1 trial showing that combination therapy of these mAbs resulted in decreased viral load and less need for hospitalization.

  4. Salama C, Han J, Yau L, et al. Tocilizumab in Patients Hospitalized with Covid-19 Pneumonia. N Engl J Med. 2021;384(1):20-30.  [PMID:33332779]

    Comment: Called a positive trial for tocilizumab, important points are that 1) statistical significance only when the rate of progressing to mechanical ventilation is included (not just mechanical ventilation and death as hard endpoints) and 2) > 80% of patients also received dexamethasone, suggesting that the two drugs need to work together to help patients.

  5. Parr JB. Time to Reassess Tocilizumab's Role in COVID-19 Pneumonia. JAMA Intern Med. 2021;181(1):12-15.  [PMID:33079980]

    Comment: Helpful data synthesis of major tocilizumab trials. Data overall is mixed, there may be efficacy but nothing like that suggested from observational trials--at least for immunomodulatory monotherapy tocilizumab. The author suggests waiting for more RCT data to determine if the drug is helpful for COVID-19 patients. This paper included EMPACTA; however, not RECOVERY or REMAP-CAP which has defined a difference between dexamethasone + tocilizumab vs. tocilizumab monotherapy.

  6. WHO Rapid Evidence Appraisal for COVID-19 Therapies (REACT) Working Group, Sterne JAC, Murthy S, et al. Association Between Administration of Systemic Corticosteroids and Mortality Among Critically Ill Patients With COVID-19: A Meta-analysis. JAMA. 2020.  [PMID:32876694]

    Comment: 7 randomized trials that included 1703 patients of whom 647 died, 28-day all-cause mortality was lower among patients who received corticosteroids compared with those who received usual care or placebo (summary odds ratio, 0.66). Dexamethasone and hydrocortisone had a similar impact while the single methylprednisolone trial had less effect on mortality.

  7. Beigel JH, Tomashek KM, Dodd LE, et al. Remdesivir for the Treatment of Covid-19 - Final Report. N Engl J Med. 2020.  [PMID:32445440]

    Comment: The ACTT1 results that showed improved LOS by 4 days in patients receiving RDV. The average duration of symptoms prior to enrollment was 9d median with a wide range. The key observation from data is that benefit was derived in patients who were started prior to mechanical ventilation, suggesting that the use of the drug earlier in the disease course has efficacy--consistent with its mechanism of action as an antiviral. Final results are now available.

  8. Wang Y, Zhang D, Du G, et al. Remdesivir in adults with severe COVID-19: a randomised, double-blind, placebo-controlled, multicentre trial. Lancet. 2020;395(10236):1569-1578.  [PMID:32423584]

    Comment: Unimpressive trial, but the drug may have been given to late to too ill a population.
    N = 237 patients, halted
    Confirmed infection, 12d or fewer of symptoms, lung involvement
    Remdesivir 200 mg d 1 then 100 mg IV daily vs. placebo
    Findings:
    1. No clinical improvement (subgroup < 10d with trend)
    2. No difference in mortality (subgroup < 10d with trend)
    3. No effect on viral load in upper or lower respiratory tracts

  9. Chinazzi M, Davis JT, Ajelli M, et al. The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak. Science. 2020.  [PMID:32144116]

    Comment: Although extraordinary measures may have slowed or stopped COVID-19 in China, questions remain whether this is durable and at what cost to society? It may buy time but effective drugs or vaccines remain in the far future it seems. Authors suggest "the travel quarantine of Wuhan delayed the overall epidemic progression by only 3 to 5 days in Mainland China, but has a more marked effect at the international scale, where case importations were reduced by nearly 80% until mid-February. Modeling results also indicate that sustained 90% travel restrictions to and from Mainland China only modestly affect the epidemic trajectory unless combined with a 50% or higher reduction of transmission in the community."

  10. Mizumoto K, Chowell G. Estimating Risk for Death from 2019 Novel Coronavirus Disease, China, January-February 2020. Emerg Infect Dis. 2020;26(6).  [PMID:32168464]

    Comment: An early report and these typically have higher rates of infection due to concentrated, very ill patients than later in epidemics. Authors estimate of the risk for death in Wuhan reached values as high as 12% in the epicenter of the epidemic and ≈1% in other, more mildly affected areas. The elevated death risk estimates are probably associated with a breakdown of the healthcare system.

  11. Liu W, Zhang Q, Chen J, et al. Detection of Covid-19 in Children in Early January 2020 in Wuhan, China. N Engl J Med. 2020.  [PMID:32163697]

    Comment: A retrospective look at 366 children hospitalized for respiratory illness. SARS-CoV-2 detected only in 6 (1.6) of patients. Only 1 of the COVID children required ICU care. Of the COVID patients, fever and cough were common and four had pneumonia.

  12. Shen C, Wang Z, Zhao F, et al. Treatment of 5 Critically Ill Patients With COVID-19 With Convalescent Plasma. JAMA. 2020.  [PMID:32219428]

    Comment: A small study of 5 patients who required mechanical ventilation who appeared to benefit from convalescent plasma containing neutralizing antibodies, though also received methylprednisolone and putative antiviral therapies directed against SARS-CoV-2 infection. Authors suggest that many parameters improved including in the 4 ARDS patients.

  13. Bourouiba L. Turbulent Gas Clouds and Respiratory Pathogen Emissions: Potential Implications for Reducing Transmission of COVID-19. JAMA. 2020.  [PMID:32215590]

    Comment: Wading into the aerosol v. droplet debate, the suggestion that forceful uncovered sneezes may cause infectious droplets to go beyond the 6 ft range currently advised by the CDC. This concern has prompted universal mask wear for HCWs, but also for the general public. There may be people who are not ill and therefore sneeze or cough, asymptomatic shedding and dispersing virus.

  14. Jin X, Lian JS, Hu JH, et al. Epidemiological, clinical and virological characteristics of 74 cases of coronavirus-infected disease 2019 (COVID-19) with gastrointestinal symptoms. Gut. 2020.  [PMID:32213556]

    Comment: Paper suggests that some patients presented with GI symptoms as part of COVID-19, 11.4% of 651 in this study from Zheijiang University in Hangzhou. A caveat is their definition of GI included nausea only in addition to diarrhea and vomiting as they only needed one of the three to qualify for GI symptoms. They also suggested that patients who had GI had more severe COVID infection.

  15. Giacomelli A, Pezzati L, Conti F, et al. Self-reported olfactory and taste disorders in SARS-CoV-2 patients: a cross-sectional study. Clin Infect Dis. 2020.  [PMID:32215618]

    Comment: Authors report on patients in earlier phases of COVID-19 infection, 20 (33.9%) reported at least one taste or olfactory disorder and 11 (18.6%) both. This is not unique though as other viral respiratory infections may also cause these symptoms.

  16. Lescure FX, Bouadma L, Nguyen D, et al. Clinical and virological data of the first cases of COVID-19 in Europe: a case series. Lancet Infect Dis. 2020.  [PMID:32224310]

    Comment: Series of only five patients from France; however, the descriptions of three potential phenotypes may offer insights into different viral- and Immuno-pathogenesis. 1. Paucisymptom patient: nasopharyngeal high viral titer (and virus in feces), 2. Symptoms then decompensation (~day 10, respiratory decompensation): low viral titer compared to earlier in nasopharyngeal samples and 3. Clinical progression/death: high viral titers in upper and lower respiratory samples plus persisting viremia.

  17. Guo L, Ren L, Yang S, et al. Profiling Early Humoral Response to Diagnose Novel Coronavirus Disease (COVID-19). Clin Infect Dis. 2020.  [PMID:32198501]

    Comment: Authors used a nucleocapsid-based antibody for the detection of antibodies against SARS-CoV-2. IgM and IgA antibodies were found 5 days (IQR 3-6) after symptom onset, while IgG was detected on 14 days (IQR 10-18). Positive responses overall were seen as IgM 85.4%, IgA 92.7% and IgG 77.9% respectively. Considering both confirmed and probable cases, the positive rates of IgM antibodies were 75.6% and 93.1%, respectively. The detection efficiency by IgM ELISA is higher than that of qPCR method after 5.5 days of symptom onset. The positive detection rate is significantly increased (98.6%) when combined IgM ELISA assay with PCR for each patient compare with a single qPCR test (51.9%).

  18. Long QX, Tang XJ, Shi QL, et al. Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections. Nat Med. 2020.  [PMID:32555424]

    Comment: 37 asymptomatic individuals displayed longer viral shedding, less cytokine generation and less serological responsiveness.
    Asymptomatic 93.3% (28/30) and 81.1% (30/37) had less IgG and neutralizing Abs
    ‒In comparison , 96.8% (30/31) and 62.2% (23/37) of symptomatic patients.
    -40% asymptomatic seronegative vs. 12.9% of the symptomatic group during convalescence
    §Protective immunity may not be long-lived

  19. Boulware DR, Pullen MF, Bangdiwala AS, et al. A Randomized Trial of Hydroxychloroquine as Postexposure Prophylaxis for Covid-19. N Engl J Med. 2020.  [PMID:32492293]

    Comment: HCQ did not appear to prevent illness consistent with COVID-19 in patients with moderate or high-risk exposure to the virus when started within four days of the exposure.

  20. RECOVERY Collaborative Group, Horby P, Lim WS, et al. Dexamethasone in Hospitalized Patients with Covid-19 - Preliminary Report. N Engl J Med. 2020.  [PMID:32678530]

    Comment: Pragmatic trial and also important to note the extraordinarily high background mortality in the U.K at the time (~40%). 28-day mortality in the usual care group was highest in those patients receiving IMV (40.7%), intermediate in those receiving oxygen only (25.0%), and lowest among those who were not receiving respiratory support at randomization (13.2%). The greatest absolute reductions in 28-day mortality were seen in the sickest patients, and subgroup analysis suggests in those > 7d of symptoms which would correlate with the inflammatory phase. Dexamethasone improves 28d mortality compared to placebo in patients requiring IMV (NNT = 8.5) and those patients requiring oxygen therapy (NNT = 29). There was no benefit to patients not requiring oxygenation support and even a signal for harm.

  21. Zhu N, Zhang D, Wang W, et al. A Novel Coronavirus from Patients with Pneumonia in China, 2019. N Engl J Med. 2020.  [PMID:31978945]

    Comment: An early report includes electron microscopy photomicrographs as well as sequence analysis of what is now termed COVID-19 disease and SARS-2-CoV virus.

  22. Zhou P, Yang XL, Wang XG, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020.  [PMID:32015507]

    Comment: Authors have sequenced what is now termed SARS-2-CoV. Its genome 79.5% sequence identify to SARS-CoV. Furthermore, it was found that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus.

  23. Wang D, Hu B, Hu C, et al. Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus-Infected Pneumonia in Wuhan, China. JAMA. 2020.  [PMID:32031570]

    Comment: One of the initial major reports of the Wuhan COVID-19 epidemic. In this series, the median age was 56 and slightly more men (54%) affected. Predominant symptoms include fever, fatigue and dry cough. Leukopenia was seen in ~70%. Thirty-six patients (26.1%) were transferred to the intensive care unit (ICU) because of complications, including acute respiratory distress syndrome (22 [61.1%]), arrhythmia (16 [44.4%]), and shock (11 [30.6%]).

  24. Ai T, Yang Z, Hou H, et al. Correlation of Chest CT and RT-PCR Testing in Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases. Radiology. 2020.  [PMID:32101510]

    Comment: Chest CT shows early ground-glass infiltrates which may offer speedier "diagnosis" than PCR studies in an epidemic setting as a first finding if molecular assays not readily available.

  25. Kam KQ, Yung CF, Cui L, et al. A Well Infant with Coronavirus Disease 2019 (COVID-19) with High Viral Load. Clin Infect Dis. 2020.  [PMID:32112082]

    Comment: No surprise, here an infant sheds high levels of the virus but is without symptoms. Children are well known "vectors" of viral infection often without significant disease is well known for regular coronavirus infections, influenza and others.

  26. Weinreich DM, Sivapalasingam S, Norton T, et al. REGN-COV2, a Neutralizing Antibody Cocktail, in Outpatients with Covid-19. N Engl J Med. 2020.  [PMID:33332778]

    Comment: Interim analysis of the mAb product studied among 275 outpatients with mild-moderate COVID-19. In the overall trial population, 6% of the patients in the placebo group and 3% of the patients in the combined REGN-COV2 dose groups reported at least one medically attended visit; among patients who were serum antibody–negative at baseline, the corresponding percentages were 15% and 6% (difference, −9 percentage points; 95% CI, −29 to 11). No differences were seen in the active arm compared to placebo for adverse reactions.

  27. Spinner CD, Gottlieb RL, Criner GJ, et al. Effect of Remdesivir vs Standard Care on Clinical Status at 11 Days in Patients With Moderate COVID-19: A Randomized Clinical Trial. JAMA. 2020.  [PMID:32821939]

    Comment: Though the open-label trial cited as a reason to use 5-day instead of 10-d RDV for severe COVID-19, the fact that the 10-d course did worse without notably more side effects is concerning that the 5d data perhaps not as solid. Also, the FDA cites this trial as a reason (along with ACTT-1) to expand RDV use to those hospitalized but not needing oxygen; however, NNT =~100 and limited patients not requiring oxygen at randomization included.

  28. Wölfel R, Corman VM, Guggemos W, et al. Virological assessment of hospitalized patients with COVID-2019. Nature. 2020.  [PMID:32235945]

    Comment: A small but well-conducted study looking at 9 cases with most patients on day 1 having mild or prodromal symptoms. Key findings include finding virus in upper respiratory tissues with no difference between nasopharyngeal and oropharyngeal speeding which was very high during the first week of illness, but not in stool. Viral RNA remained in sputum beyond the resolution of symptoms. Seroconversion occurred by day 7 in 50% of patients but by day 14 in 100%. Despite the knowledge gained about viral kinetics, this paper offers proof that illness may also present as a routine upper respiratory tract infection without pneumonia or lower tract symptoms.

  29. Grein J, Ohmagari N, Shin D, et al. Compassionate Use of Remdesivir for Patients with Severe Covid-19. N Engl J Med. 2020.  [PMID:32275812]

    Comment: Early experience with this antiviral in severe COVID-19 illness, found that there was an improvement in 36 of 53 patients (68%). Seven patients (13%) died; mortality was 18% (6 of 34) among patients receiving invasive ventilation and 5% (1 of 19) among those not receiving invasive ventilation. The lack of a control arm makes this number difficult to understand whether the drug is helpful. As authors indicate, there is a need to await RCT data.

  30. Kim D, Quinn J, Pinsky B, et al. Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens. JAMA. 2020.  [PMID:32293646]

    Comment: Series of 1217 specimens analyzed for respiratory viruses, found 116/1217 specimens (9.5%) were positive for SARS-CoV-2 and 318 (26.1%) were positive for 1 or more non–SARS-CoV-2 pathogens. WIthin the SARS-CoV-2 positive specimens, 24 (20.7%) were positive for 1 or more additional pathogens. The most commonly detected co-infections were rhinovirus/enterovirus (6.9%), respiratory syncytial virus (5.2%), and non–SARS-CoV-2 Coronaviridae (4.3%). This report yielded higher viral co-pathogen rates than earlier COVID-19 studies, but similar to the co-infection rates seen with many standard respiratory viral illnesses. Importantly, this means that finding a virus other than the SARS-CoV-2 should not be grounds for concluding that COVID-19 is not present.

  31. Chow EJ, Schwartz NG, Tobolowsky FA, et al. Symptom Screening at Illness Onset of Health Care Personnel With SARS-CoV-2 Infection in King County, Washington. JAMA. 2020.  [PMID:32301962]

    Comment: Syndromic screening that used fever and respiratory symptoms failed to detect SARS-CoV-2 infection (often at high titer) in 17% of HCWs presenting for assessment. While limited testing has forced decisions to screen people at a higher likelihood of infection, the wide range of potential COVID-19 infection means that some may unknowingly work and spread the virus. This no doubt is one reason the virus has spread so rapidly.

  32. Grasselli G, Zangrillo A, Zanella A, et al. Baseline Characteristics and Outcomes of 1591 Patients Infected With SARS-CoV-2 Admitted to ICUs of the Lombardy Region, Italy. JAMA. 2020.  [PMID:32250385]

    Comment: A large critical care experience derived from Northern Italy had 1591 patients who 68% had 1 comorbidity and 82% were male. Mortality as of the 3/25/20 writing date was 26%.

  33. Liu Y, Ning Z, Chen Y, et al. Aerodynamic analysis of SARS-CoV-2 in two Wuhan hospitals. Nature. 2020.  [PMID:32340022]

    Comment: An entry into the PRO potential for routine aerosolization of SARS-CoV-2. Viral RNA (unclear if infectious) found in toilet areas but not in ventilated isolation words. Levels also seen in areas prone to crowing including medical staff areas.

  34. Borba MGS, Val FFA, Sampaio VS, et al. Effect of High vs Low Doses of Chloroquine Diphosphate as Adjunctive Therapy for Patients Hospitalized With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection: A Randomized Clinical Trial. JAMA Netw Open. 2020;3(4):e208857.  [PMID:32339248]

    Comment: High dose CQ suggested to contribute to mortality. 440 patients, 81 were enrolled (41 [50.6%] to a high-dosage group and 40 [49.4%] to low-dosage group). Enrolled patients had a mean (SD) age of 51.1 (13.9) years, and most (60 [75.3%]) were men. Older age (mean [SD] age, 54.7 [13.7] years vs 47.4 [13.3] years) and more heart disease (5 of 28 [17.9%] vs 0) were seen in the high-dose group. Viral RNA was detected in 31 of 40 (77.5%) and 31 of 41 (75.6%) patients in the low-dosage and high-dosage groups, respectively. Lethality until day 13 was 39.0% in the high-dosage group (16 of 41) and 15.0% in the low-dosage group (6 of 40). The high-dosage group presented more instances of QTc interval greater than 500 milliseconds (7 of 37 [18.9%]) compared with the low-dosage group (4 of 36 [11.1%]). Respiratory secretion at day 4 was negative in only 6 of 27 patients (22.2%).

  35. Chen T, Wu D, Chen H, et al. Clinical characteristics of 113 deceased patients with coronavirus disease 2019: retrospective study. BMJ. 2020;368:m1091.  [PMID:32217556]

    Comment: Patients in this Chinese retrospective study were older (median 68 yrs), male (73%) and had cardiovascular disease, including hypertension. While ARDS was common, acute cardiac injury and heart failure were also felt to contribute to high mortality.

  36. Cheng Y, Wong R, Soo YO, et al. Use of convalescent plasma therapy in SARS patients in Hong Kong. Eur J Clin Microbiol Infect Dis. 2005;24(1):44-6.  [PMID:15616839]

    Comment: SARS paper that may inform COVID-19 infection. Benefit from convalescent plasma for treatment suggested by earlier discharge.

  37. Interim U.S. Guidance for Risk Assessment and Public Health Management of Healthcare Personnel with Potential Exposure in a Healthcare Setting to Patients with Coronavirus Disease 2019 (COVID-19). U.S. Centers for Disease Control and Prevention. [https://www.cdc.gov/coronavirus/2019-ncov/hcp/guidance-risk-assesment-hcp.html] (last updated 3/11/21, accessed 7/7/21]

    Comment: Contact tracing has been shortened from 10d to 2d, for operational reasons, and based on data suggesting lower viral shedding in asymptomatic individuals.

  38. Interim Infection Prevention and Control Recommendations for Patients with Confirmed Coronavirus Disease 2019 (COVID-19) or Persons Under Investigation for COVID-19 in Healthcare Settings. U.S. Centers for Disease Control and Prevention. [https://www.cdc.gov/coronavirus/2019-ncov/hcp/infection-control-recommenda...] last updated 2/23/20, accessed 7/7/21

    Comment: Helpful guidance from the CDC regarding a number of healthcare settings for COVID-related infection control practices.
    Dec 2020: new recs include
    Described recommended IPC practices when caring for patients who have met the criteria for a 14-day quarantine based on prolonged close contact with someone with SARS-CoV-2 infection.

    Added reminders that double gloving is not recommended when providing care to patients with suspected or confirmed SARS-CoV-2 infection
    In general, HCP caring for patients with suspected or confirmed SARS-CoV-2 infection should not wear more than one isolation gown at a time.

Coronavirus COVID-19 (SARS-CoV-2) is a sample topic from the Johns Hopkins ABX Guide.

To view other topics, please or .

Official website of the Johns Hopkins Antibiotic (ABX), HIV, Diabetes, and Psychiatry Guides, powered by Unbound Medicine. Johns Hopkins Guide App for iOS, iPhone, iPad, and Android included. .

Last updated: July 8, 2021